Highly Optimized Object-oriented Many-particle Dynamics -- Blue Edition

Citing HOOMD-blue

  • Include both of the following citations in any work that uses HOOMD-blue.
    • HOOMD-blue web page: http://codeblue.umich.edu/hoomd-blue
    • J. A. Anderson, C. D. Lorenz, and A. Travesset. General purpose molecular dynamics simulations fully implemented on graphics processing units Journal of Computational Physics 227(10): 5342-5359, May 2008. 10.1016/j.jcp.2008.01.047
  • If you utilize the rigid body functionality, also cite
    • T. D. Nguyen, C. L. Phillips, J. A. Anderson, and S. C. Glotzer. Rigid body constraints realized in massively-parallel molecular dynamics on graphics processing units Computer Physics Communications 182(11): 2313-2307, June 2011. 10.1016/j.cpc.2011.06.005
  • If you utilize the DPD functionality, also cite
    • C. L. Phillips, J. A. Anderson, and S. C. Glotzer. Pseudo-random number generation for Brownian Dynamics and Dissipative Particle Dynamics simulations on GPU devices Journal of Computational Physics 230(19): 7191-7201, Aug. 2011. 10.1016/j.jcp.2011.05.021
  • If you utilize the EAM functionality, also cite
    • I.V. Morozov, A.M. Kazennova, R.G. Bystryia, G.E. Normana, V.V. Pisareva, and V.V. Stegailova. Molecular dynamics simulations of the relaxation processes in the condensed matter on GPUs Computer Physics Communications 182(9): 1974-1978, 2011. 10.1016/j.cpc.2010.12.026
  • If you utilize the PPPM functionality, also cite
    • D. N. LeBard, B. G. Levine, P. Mertmann, S. A. Barr, A. Jusufi, S. Sanders, M. L. Klein, and A. Z. Panagiotopoulos. Self-assembly of coarse-grained ionic surfactants accelerated by graphics processing units Soft Matter 8: 2385-2397, 2012. 10.1039/c1sm06787g
  • If you utilize the CGCMM potential, also cite
    • B. G. Levine, D. N. LeBard, R. DeVane, W. Shinoda, A. Kohlmeyer, and M. L. Klein. Micellization studied by GPU-accelerated coarse-grained molecular dynamics Journal of Chemical Theory and Computation 7(12): 4135-4145, Oct. 2011. 10.1021/ct2005193

Download bibtex entries of these citations for import into your bibliography management software.

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Latest Stable release

HOOMD-blue 0.11.3

Description Download GPG signature
Binaries
Mac OS X 10.6 application hoomd-v0.11.3-Darwin-10.6.dmghoomd-v0.11.3-Darwin-10.6.dmg.asc
Centos 6 x86_64 RPM hoomd-0.11.3-0.x86_64.rpm -
Centos 5 x86_64 RPM hoomd-0.11.3-0.x86_64.rpm -
Fedora 16 x86_64 RPM hoomd-0.11.3-0.x86_64.rpm -
OpenSUSE 12.1 x86_64 RPM hoomd-0.11.3-0.x86_64.rpm -
Ubuntu 10.04 amd64 deb hoomd-blue_0.11.3-0_amd64.debhoomd-blue_0.11.3-0_amd64.deb.asc
Gentoo See Installation Guide
Request binaries for a another OS
Source code and documentation
Source code hoomd-0.11.3.tar.bz2hoomd-0.11.3.tar.bz2.asc
User documentation hoomd-userdoc-0.11.3.pdfhoomd-userdoc-0.11.3.pdf.asc
Developer documentation hoomd-devdoc-0.11.3.tar.bz2hoomd-devdoc-0.11.3.tar.bz2.asc

See the Installation Guide for system requirements and installation instructions. This download is CUDA-enabled to accelerate on GPUs.

All files are signed by Joshua Anderson, HOOMD-blue lead developer. RPMs contain an embedded signature that be validated using this RPM signing key. All other files can be validated by downloading the corresponding detached signature file and verifying with this GPG key.

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Daily snapshots

Every morning, the latest development version is built and uploaded to downloads/daily. Binaries are provided for CentOS/RHEL 5,6, Fedora 16, OpenSUSE 12.1, Ubuntu 10.04 LTS, and Mac OS X 10.6+. Gentoo users can install the latest snapshot using the live ebuild available in the sunrise overlay.

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Previous releases

HOOMD-blue 0.11.2

Description Download GPG signature
Binaries
Mac OS X 10.6 application hoomd-v0.11.2-Darwin-10.6.dmghoomd-v0.11.2-Darwin-10.6.dmg.asc
Centos 6 x86_64 RPM hoomd-0.11.2-0.x86_64.rpm -
Centos 5 x86_64 RPM hoomd-0.11.2-0.x86_64.rpm -
Fedora 16 x86_64 RPM hoomd-0.11.2-0.x86_64.rpm -
OpenSUSE 12.1 x86_64 RPM hoomd-0.11.2-0.x86_64.rpm -
Ubuntu 10.04 amd64 deb hoomd-blue_0.11.2-0_amd64.debhoomd-blue_0.11.2-0_amd64.deb.asc
Gentoo See Installation Guide
Request binaries for a another OS
Source code and documentation
Source code hoomd-0.11.2.tar.bz2hoomd-0.11.2.tar.bz2.asc
User documentation hoomd-userdoc-0.11.2.pdfhoomd-userdoc-0.11.2.pdf.asc
Developer documentation hoomd-devdoc-0.11.2.tar.bz2hoomd-devdoc-0.11.2.tar.bz2.asc

HOOMD-blue 0.11.1

Description Download GPG signature
Binaries
Mac OS X 10.6 application hoomd-v0.11.1-Darwin-10.6.dmghoomd-v0.11.1-Darwin-10.6.dmg.asc
Centos 6 x86_64 RPM hoomd-0.11.1-0.x86_64.rpm -
Centos 5 x86_64 RPM hoomd-0.11.1-0.x86_64.rpm -
Fedora 16 x86_64 RPM hoomd-0.11.1-0.x86_64.rpm -
OpenSUSE 12.1 x86_64 RPM hoomd-0.11.1-0.x86_64.rpm -
Ubuntu 10.04 amd64 deb hoomd-blue_0.11.1-0_amd64.debhoomd-blue_0.11.1-0_amd64.deb.asc
Gentoo See Installation Guide
Request binaries for a another OS
Source code and documentation
Source code hoomd-0.11.1.tar.bz2hoomd-0.11.1.tar.bz2.asc
User documentation hoomd-userdoc-0.11.1.pdfhoomd-userdoc-0.11.1.pdf.asc
Developer documentation hoomd-devdoc-0.11.1.tar.bz2hoomd-devdoc-0.11.1.tar.bz2.asc

HOOMD-blue 0.11.0

Description Download GPG signature
Binaries
Mac OS X 10.6 application hoomd-v0.11.0-Darwin-10.6.dmghoomd-v0.11.0-Darwin-10.6.dmg.asc
Centos 6 x86_64 RPM hoomd-0.11.0-0.x86_64.rpm -
Centos 5 x86_64 RPM hoomd-0.11.0-0.x86_64.rpm -
Fedora 14 x86_64 RPM hoomd-0.11.0-0.x86_64.rpm -
Ubuntu 10.04 amd64 deb hoomd-blue_0.11.0-0_amd64.debhoomd-blue_0.11.0-0_amd64.deb.asc
Gentoo See Installation Guide
Request binaries for a another OS
Source code and documentation
Source code hoomd-0.11.0.tar.bz2hoomd-0.11.0.tar.bz2.asc
User documentation hoomd-userdoc-0.11.0.pdfhoomd-userdoc-0.11.0.pdf.asc
Developer documentation hoomd-devdoc-0.11.0.tar.bz2hoomd-devdoc-0.11.0.tar.bz2.asc

Archived versions

Version Source User documentation
0.10.1 hoomd-0.10.1.tar.bz2hoomd-userdoc-0.10.1.pdf
0.10.0 hoomd-0.10.0.tar.bz2hoomd-userdoc-0.10.0.pdf
0.9.2 hoomd-0.9.2.tar.bz2hoomd-userdoc-0.9.2.pdf
0.9.1 hoomd-0.9.1.tar.bz2hoomd-userdoc-0.9.1.pdf
0.9.0 hoomd-0.9.0.tar.bz2hoomd-userdoc-0.9.0.pdf
0.8.2 hoomd-0.8.2.tar.bz2hoomd-userdoc-0.8.2.pdf
0.8.1 hoomd-0.8.1.tar.bz2hoomd-userdoc-0.8.1.pdf
0.8.0 hoomd-0.8.0.tar.bz2hoomd-userdoc-0.8.0.pdf
0.7.1 hoomd-0.7.1.tar.bz2hoomd-userdoc-0.7.1.tar.bz2
0.7.0 hoomd-0.7.0.tar.bz2hoomd-userdoc-0.7.0.tar.bz2
0.6.1 hoomd-0.6.1.tar.bz2 -
0.6.0 hoomd-0.6.0.tar.bz2 -

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